Success! Pulled the side panels out of the first molds today and they have come out good. Still needs a fair amount of work though to make the surfaces perfect along with aligning with the clay and fixing to the mock-up.
Most of the time this week has been spent making fibreglass molds of the remainder of the bike. Most of these parts will have to made using split molds, which take a couple of days to layup. Above is a photo of the tank/airbox cover, which splits into 3 parts (top and two sides).